| 菌 | きん | 1: fungus; 2: germ; bacterium; bacillus |
| 菌 | たけ | mushroom |
| 菌 | きのこ | mushroom |
| 無菌 | むきん | sterilised; pasteurised; pasteurized |
| 菌糸 | きんし | fungal filament; hypha; hyphae |
| 保菌 | ほきん | carrying a disease |
| 抗菌 | こうきん | antibacterial; antimicrobial |
| 細菌 | さいきん | bacillus; bacterium; germ |
| 殺菌 | さっきん | sterilization; sterilisation; disinfection |
| 除菌 | じょきん | bacteria elimination |
| 桿菌 | かんきん | bacillus |
| 菌核 | きんかく | sclerotium |
| 菌株 | きんかぶ | strain of microorganism |
| 菌環 | きんかん | fairy ring; mushroom ring |
| 菌学 | きんがく | mycology; fungology |
| 菌種 | きんしゅ | bacterial strain |
| 菌体 | きんたい | 1: bacterial cell; 2: fungus body |
| 菌毒 | きんどく | mushroom poison |
| 菌輪 | きんりん | fairy ring; mushroom ring |
| 菌類 | きんるい | fungus; fungi |
| 雑菌 | ざっきん | microorganisms; saprophyte; saprophytic bacteria |
| 種菌 | しゅきん | mother (fungal colony used to start fermentation); starter culture; seed fungus |
| 真菌 | しんきん | fungus; fungi |
| 種菌 | たねきん | mother (fungal colony used to start fermentation); starter culture; seed fungus |
| 毒菌 | どくきん | poison mushroom |
| 粘菌 | ねんきん | myxomycete; slime mold |
| 黴菌 | ばいきん | 1: germ; germs; bacteria; mold (mould); 2: something harmful (used figuratively); vermin |
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